One of the more popular mod cleaning tools for Morrowind these days is, and it can be a very useful program for completely cleaning a mod in one go. Problem is, most people don’t like command-line programs too well, because they’re a little hard to use and there’s a number of graphical interface tools that do mostly the same things. Still, tes3cmd can be pretty quick and painless for getting mod cleaning done right, so it’s an important subject to cover. Now, the tutorial below was actually written by Pinkertonius on the Bethesda Forums, and all credit should go to him for making such a simple and straight-forward guide. I’m just posting it here for convenience.
TES3CMD by John Moonsugar This program is great at cleaning, fixit, fiddling with a mod. It’s very thorough and catches stuff other cleaner do while not breaking the mod (Yes, I’m looking at you TESTOOL). It can update the headers to match the ESMS, recover bad mods, dump data, and so much more. It even has a “fixit” command that will actually fix it (unlike ahem cough.TESTOOLcough). The main drawback is no GUI. That does limit audience, because to be honest while versatile, the command line just isn’t that much fun. Heck in windows, its a pain to even get it the directory you want.
AllMyNotes Organizer Deluxe edition keygen allows you to customize the default structure by deleting some entries and adding new ones. Also, each folder can be customized by assigning a more familiar icon or changing the title and background color. 
But I have a way: Manual Method: Find your Morrowind/DataFiles directory Right click it while holding shift Select “open cmd window here” and a Command box will appear with the directory all ready set to Data Files. As long as TES3CMD is in that directory, Type “TES3CMD clean ” or “Tes3cmd fixit” (to fix everything) I also have made a bat file that will allow you to drag and drop an esp right on top of it and it will clean it then put the results and log file right back where the ESP came from. I use this for my “Morrowind Archive” directory. I like to clean the mods before I put them in my Data Files directory. Here’s how (sampled for TESELINT) More “I hate command lines” friendly method: Open Notepad. Cut and paste below.
Save as.bat file where ever you installed TES3CMD. Then find the file, right click and select Send->Send to desktop as shortcut. Now you can drag an esp from any folder onto your desktop shortcut and it will clean it and put the clean one right back where it came from.
Hallo, when I try to open Data Files so I can make my plugins active game crashes. No report, no warning, nothing. I just reinstalled game and installed one patch Morrowind Code Patch-19510-2-1 and Morrowind comes alive 2.1 but I don't think it's connected. The only mod I've successfully gotten to show up in the data files section of the launcher is the Morrowind Code Patcher. The mods I've attempted to install are Better Bodies and the Morrowind Patch Project.
Batch file text (cut and paste the below) @echo off rem drag and dropable bat file rem put shortcut on desktop and drag esp onto it rem “clean” file and log will be added to same folder the esp came from tes3cmd clean%1 >%1-cleaned.log type%1-cleaned.log pause In my experience 95% of my mods were somekind of dirty. And this fixes that. Just follow this guide, and you should be able to clean any Morrowind mod without any problems.
Repurchased morrowind (having originally got it as an original purchase with my xbox WAAAY back in the day) and downloaded overhaul 3.0 yesterday. Finishing up character creation, I took the silt strider and greeted my old friend balmora. Joined the fighters guild, mages guild and thiefs guild straight up, so as to avoid refusal of invite later. Gonna check out imperial legion next.
To those curious about the overhaul, Basically the overhaul has vastly enhanced graphics whilst retaining the core gameplay of morrowind, with some slight tweaks (all optional during the lengthy overhaul installation process). The environments and architecture in particular look better than oblivion and only slightly inferior to skyrim, however character models are still unfortunately blocky, and despite what I am sure was a titanic effort, character models and NPC movement has lagged behind. NPCs seem to lack a few too many frames when moving and look like robots when gliding around. A pity, but by no means gamebreaking. Players whom have jumped in at skyrim should beware; overhaul has really only made graphical improvements; gameplay is still based off a hidden dice rolling system, and as such the RPG elements of the game are significantly more pronounced than bethesda's more recent games. Morrowind will not handhold you through questing either; expect frequent referrals to your journal and a heavy dose of exploration; there are no quest marker arrows on your map or on NPC's heads:D It's a purer, more focused RPG game than the more recent fallout and elder scrolls games, more akin to pen and paper RPGs than modern PC rpgs. The RPG and questing systems will chew up and spit out those whom are unaware; starting off is gruesome, but well worth the investment.
I did create the gateway recovery disk for my daughter's laptop. In the BIOS setup have set the DVD drive as the first boot option followed by the HD. When starting the laptop, I hear the DVD. Gateway recovery download.